OBO Foundry dashboard analysis¶

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/tmp/ipykernel_3515/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            19
RDF/XML Syntax    18
unknown           11
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 37 4590.244898 17801.366192 0.0 2.0 264.0 2532.0 124680.0
Declaration 37 962.653061 3262.309008 0.0 12.0 104.0 848.0 22818.0
SubClassOf 35 1082.653061 3548.021289 0.0 0.0 49.0 884.0 24611.0
ObjectPropertyDomain 33 23.897959 31.017633 0.0 0.0 18.0 26.0 133.0
ObjectPropertyRange 33 25.897959 32.555878 0.0 0.0 19.0 30.0 144.0
DataPropertyRange 29 9.653061 19.383789 0.0 0.0 1.0 10.0 97.0
SubObjectPropertyOf 27 34.204082 53.181677 0.0 0.0 6.0 50.0 214.0
InverseObjectProperties 27 10.061224 25.459452 0.0 0.0 1.0 8.0 126.0
ClassAssertion 26 134.673469 402.037021 0.0 0.0 1.0 20.0 1952.0
DataPropertyDomain 26 9.244898 34.140354 0.0 0.0 1.0 4.0 235.0
DisjointClasses 26 261.591837 1752.453898 0.0 0.0 1.0 7.0 12277.0
EquivalentClasses 23 50.734694 96.814207 0.0 0.0 0.0 62.0 395.0
TransitiveObjectProperty 21 2.673469 4.190206 0.0 0.0 0.0 4.0 15.0
SubAnnotationPropertyOf 17 9.571429 32.986740 0.0 0.0 0.0 8.0 228.0
SubDataPropertyOf 15 4.408163 11.232242 0.0 0.0 0.0 1.0 63.0
FunctionalDataProperty 15 1.020408 1.887346 0.0 0.0 0.0 2.0 8.0
FunctionalObjectProperty 15 1.836735 3.429935 0.0 0.0 0.0 2.0 11.0
SymmetricObjectProperty 14 2.326531 4.473942 0.0 0.0 0.0 1.0 16.0
InverseFunctionalObjectProperty 13 1.367347 3.039284 0.0 0.0 0.0 1.0 12.0
AnnotationPropertyRangeOf 13 5.408163 19.717715 0.0 0.0 0.0 1.0 134.0
ObjectPropertyAssertion 12 303.612245 1485.201695 0.0 0.0 0.0 0.0 10226.0
IrrefexiveObjectProperty 12 2.510204 5.763110 0.0 0.0 0.0 0.0 22.0
AsymmetricObjectProperty 10 1.959184 4.712391 0.0 0.0 0.0 0.0 16.0
DisjointUnion 7 5.204082 18.288179 0.0 0.0 0.0 0.0 116.0
DataPropertyAssertion 7 125.693878 543.037606 0.0 0.0 0.0 0.0 3617.0
AnnotationPropertyDomain 6 0.244898 0.924901 0.0 0.0 0.0 0.0 6.0
EquivalentObjectProperties 6 1.306122 5.370460 0.0 0.0 0.0 0.0 36.0
DifferentIndividuals 5 0.367347 1.269742 0.0 0.0 0.0 0.0 6.0
DisjointObjectProperties 5 0.408163 1.498866 0.0 0.0 0.0 0.0 8.0
SubPropertyChainOf 5 0.755102 2.696685 0.0 0.0 0.0 0.0 13.0
ReflexiveObjectProperty 5 0.102041 0.305839 0.0 0.0 0.0 0.0 1.0
SameIndividual 3 0.632653 2.766570 0.0 0.0 0.0 0.0 17.0
NegativeObjectPropertyAssertion 2 0.040816 0.199915 0.0 0.0 0.0 0.0 1.0
Rule 2 0.244898 1.267060 0.0 0.0 0.0 0.0 8.0
EquivalentDataProperties 2 0.183673 0.905388 0.0 0.0 0.0 0.0 5.0
DatatypeDefinition 2 0.408163 2.715069 0.0 0.0 0.0 0.0 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 38 3851.326531 11084.925807 0.0 20.0 227.0 2705.0 70987.0
ObjectUnionOf 27 13.632653 22.264222 0.0 0.0 2.0 13.0 88.0
ObjectAllValuesFrom 25 27.448980 64.266068 0.0 0.0 1.0 31.0 400.0
ObjectIntersectionOf 22 32.265306 91.823376 0.0 0.0 0.0 17.0 470.0
ObjectSomeValuesFrom 22 129.040816 304.902372 0.0 0.0 0.0 90.0 1478.0
ObjectExactCardinality 20 7.020408 23.086332 0.0 0.0 0.0 3.0 115.0
DataExactCardinality 16 1.959184 3.690975 0.0 0.0 0.0 3.0 14.0
DataHasValue 14 29.326531 80.521837 0.0 0.0 0.0 4.0 494.0
DataAllValuesFrom 12 0.877551 1.888922 0.0 0.0 0.0 0.0 8.0
ObjectComplementOf 11 1.897959 4.844434 0.0 0.0 0.0 0.0 22.0
ObjectOneOf 10 15.224490 58.776861 0.0 0.0 0.0 0.0 272.0
ObjectHasValue 10 9.632653 34.757909 0.0 0.0 0.0 0.0 189.0
ObjectMinCardinality 9 0.836735 2.383511 0.0 0.0 0.0 0.0 11.0
DataSomeValuesFrom 7 0.530612 1.324482 0.0 0.0 0.0 0.0 4.0
ObjectMaxCardinality 5 19.061224 127.674294 0.0 0.0 0.0 0.0 894.0
DataMinCardinality 3 0.326531 2.004035 0.0 0.0 0.0 0.0 14.0
DataMaxCardinality 3 1.632653 8.994660 0.0 0.0 0.0 0.0 61.0

OBO Score (Experimental)

ontology score score_dash score_impact
30 OBO 0.336 0.571 0.102
19 IAO 0.300 0.600 0.000
17 FOAF 0.289 0.333 0.245
0 AMONTOLOGY 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
31 OEO 0.285 0.571 0.000
45 enanomapper 0.285 0.571 0.000
4 CHAMEO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
35 QUDT 0.275 0.549 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
34 PROVO 0.273 0.504 0.041
12 EMMO_atomistic 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
38 SEMMD 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
37 SAREF 0.241 0.482 0.000
40 SO 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
32 OM 0.234 0.467 0.000
43 UO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
41 SP 0.234 0.467 0.000
24 MSEO 0.222 0.444 0.000
26 MaterialsMine 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
46 mvc 0.222 0.444 0.000
33 PMD 0.222 0.444 0.000
39 SKOS_MDO 0.200 0.400 0.000
47 periodictable 0.200 0.400 0.000
44 WILD 0.200 0.400 0.000
42 SSN 0.189 0.378 0.000
48 ssos 0.155 0.311 0.000
1 BWMD-DOMAIN 0.000 0.000 0.000
5 CIF 0.000 0.000 0.000
2 BWMD-MID 0.000 0.000 0.000
11 EMMO_Datamodel 0.000 0.000 0.000
15 EMMO_mechanical_testing 0.000 0.000 0.000
9 EMMO_BVC 0.000 0.000 0.000
16 EMMO_microstructure 0.000 0.000 0.000
23 MOL_TENSILE 0.000 0.000 0.000
28 NanoMine 0.000 0.000 0.000
36 QUDV 0.000 0.000 0.000
20 LPBFO 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 49.0 0.190204 0.108078 0.0 0.189 0.234 0.273 0.336
score_dash 49.0 0.372347 0.211165 0.0 0.333 0.444 0.504 0.600
score_impact 49.0 0.007918 0.037925 0.0 0.000 0.000 0.000 0.245

OBO dependency graph